Posters, tutorials and presentations--past 5+ years

• Poster: "Using a a co-occurrence Network of Life Science Concepts to search PubMed," at the 2010 NCI-NCRI Informatics Initiative Joint Conference, Washington, D.C.

• Presentation: Ontologies: "What are they?" and "How do they work?"

• SIGUCCS 2009 paper and presentation: Introduction to RDF, Jena, SparQL and the "Semantic Web"
  • Proceedings paper
  • conference presentation slide set

• Presentation: Introduction to the Semantic Web and Bio2RDF, the "semantic web atlas of postgenomic knowledge"

• Tutorial: Using the relational and eUtils interfaces to dbSNP

• Tutorial: Using XML::Twig to read XML (sent by NCBI eUtils)

• Commentary: A short list of articles describing caBIG

• Tutortial: Using dbSNP via SQL queries

• Presentation: Using Jarnac to model very simple network motifs

• Poster: "Making relational data available over the Grid: A survey from CGI to OGSA-DAI" presented at TeraGrid 2007.

• Poster: "Using WSRF to build workflow scripts: Temp "files" and filters in a Grid environment" presetned at TeraGrid 2007.

• Presentation: Introduction to the Centralized Life Science Data (CLSD) service

• Tutorial: Using the NCBI eUtilities via CGI

• Tutorial: Using the Linden Script Language (LSL) within the SecondLife virtual environment.

Older work

• Web pages on looking for patterns related to chaotic, and/or scale invariant, behavior in Internet traffic, DNA sequences, and other dynamic processes. See:
  • Searching for patterns in the Netometer and Webometer archives,
  • Characterizing archived Netometer and Webometer data with respect to power-law distributions and fractal dimensionality,

• Web page: A prototype system for the simulation of cellular activity

• Tutorial: An introduction to the Message Passing Interface (MPI) using Fortran

• Tutorial: The architecture and use of the Origin 2000